L2L Microarray Analysis Tool
Results for L04AX.profile.d50
| Results summary | View all lists in GO:BiolProc | View all genes in L04AX.profile.d50 |
| List Name | Description | Total probes |
Expected matches |
Actual matches |
Fold Enrichment |
Binomial p-value |
|---|---|---|---|---|---|---|
| positive regulation of transcription | Any process that activates or increases the frequency, rate or extent of transcription. | 439 | 1.09 | 8 | 7.37 | 1.74e-05 |
| positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. | 450 | 1.11 | 8 | 7.19 | 2.08e-05 |
| histone acetylation | The modification of histones by addition of acetyl groups. | 31 | 0.08 | 3 | 39.15 | 6.45e-05 |
| positive regulation of cellular metabolic process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. | 539 | 1.33 | 8 | 6.00 | 7.34e-05 |
| positive regulation of metabolic process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. | 567 | 1.40 | 8 | 5.71 | 1.04e-04 |
| protein amino acid acetylation | The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. | 40 | 0.10 | 3 | 30.34 | 1.39e-04 |
| polyamine biosynthetic process | The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups. | 9 | 0.02 | 2 | 89.90 | 2.17e-04 |
| protein amino acid acylation | The addition of an acyl group, any group or radical of the form RCO- where R is an organic group, to a protein amino acid. | 52 | 0.13 | 3 | 23.34 | 3.05e-04 |
| G2/M transition DNA damage checkpoint | A cell cycle checkpoint that blocks cell cycle progression from G2 to M phase in response to DNA damage. | 11 | 0.03 | 2 | 73.55 | 3.31e-04 |
| G2/M transition checkpoint | Any cell cycle checkpoint that blocks entry into M phase. | 11 | 0.03 | 2 | 73.55 | 3.31e-04 |
| snRNA metabolic process | The chemical reactions and pathways involving snRNA, small nuclear RNA, any of various low-molecular-mass RNA molecules found in the eukaryotic nucleus as components of the small nuclear ribonucleoprotein. | 12 | 0.03 | 2 | 67.42 | 3.97e-04 |
| snRNA processing | Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule. | 12 | 0.03 | 2 | 67.42 | 3.97e-04 |
| histone modification | The covalent alteration of one or more amino acid residues within a histone protein. | 68 | 0.17 | 3 | 17.85 | 6.71e-04 |
| covalent chromatin modification | The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups. | 69 | 0.17 | 3 | 17.59 | 7.01e-04 |
| RNA metabolic process | The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. | 3263 | 8.07 | 19 | 2.36 | 7.03e-04 |
| mitosis | Progression through mitosis, the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother. | 284 | 0.70 | 5 | 7.12 | 7.75e-04 |
| polyamine metabolic process | The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. | 17 | 0.04 | 2 | 47.59 | 8.11e-04 |
| M phase of mitotic cell cycle | Progression through M phase, the part of the mitotic cell cycle during which mitosis and cytokinesis take place. | 290 | 0.72 | 5 | 6.97 | 8.51e-04 |
| microtubule organizing center organization and biogenesis | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a microtubule organizing center, a structure from which microtubules grow. | 18 | 0.04 | 2 | 44.95 | 9.11e-04 |
| centrosome organization and biogenesis | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a centrosome, a structure comprised of a pair of centrioles and peri-centriolar material from which a microtubule spindle apparatus is organized. | 18 | 0.04 | 2 | 44.95 | 9.11e-04 |
| cell division | The processes resulting in the physical partitioning and separation of a cell into daughter cells. | 297 | 0.73 | 5 | 6.81 | 9.46e-04 |
| heart development | The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. | 178 | 0.44 | 4 | 9.09 | 1.07e-03 |
| DNA damage response, signal transduction | A cascade of processes induced by the detection of DNA damage within a cell. | 90 | 0.22 | 3 | 13.48 | 1.51e-03 |
| nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. | 4320 | 10.68 | 22 | 2.06 | 1.56e-03 |
| biopolymer metabolic process | The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature e.g. polysaccharides and proteins. | 5812 | 14.37 | 27 | 1.88 | 1.84e-03 |
| anterior/posterior pattern formation | The regionalization process by which specific areas of cell differentiation are determined along the anterior-posterior axis. | 99 | 0.24 | 3 | 12.26 | 1.98e-03 |
| establishment and/or maintenance of chromatin architecture | The specification, formation and maintenance of the physical structure of eukaryotic chromatin. | 365 | 0.90 | 5 | 5.54 | 2.33e-03 |
| positive regulation of transcription, DNA-dependent | Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription. | 368 | 0.91 | 5 | 5.50 | 2.41e-03 |
| DNA packaging | Any process by which DNA and associated proteins are formed into a compact, orderly structure. | 371 | 0.92 | 5 | 5.45 | 2.49e-03 |
| M phase | Progression through M phase, the part of the cell cycle comprising nuclear division and cytokinesis. | 375 | 0.93 | 5 | 5.39 | 2.61e-03 |
| biogenic amine biosynthetic process | The chemical reactions and pathways resulting in the formation of any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. | 36 | 0.09 | 2 | 22.47 | 3.64e-03 |
| regulation of transcription | Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA. | 2702 | 6.68 | 15 | 2.25 | 3.73e-03 |
| mitotic checkpoint | A signal transduction-based surveillance mechanism that ensures accurate chromosome segregation by preventing entry into, passage through and exit from mitosis. Events that may be monitored include the formation of a correctly assembled spindle, the position of the spindle pole (centrosome) and the orientation of the spindle and cellular morphogenesis. | 37 | 0.09 | 2 | 21.87 | 3.84e-03 |
| chromatin modification | The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure. | 256 | 0.63 | 4 | 6.32 | 3.98e-03 |
| mitotic cell cycle | Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, in which a cell is duplicated without changing ploidy; comprises four successive phases called G1, S, G2, and M. | 421 | 1.04 | 5 | 4.80 | 4.26e-03 |
| regulation of cellular metabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. | 3041 | 7.52 | 16 | 2.13 | 4.65e-03 |
| regulation of transcription, DNA-dependent | Any process that modulates the frequency, rate or extent of DNA-dependent transcription. | 2510 | 6.20 | 14 | 2.26 | 4.77e-03 |
| protein import into nucleus, docking | The aggregation and bonding together of the nuclear localization signal of a protein with nuclear envelope proteins such as importins. | 42 | 0.10 | 2 | 19.26 | 4.93e-03 |
| regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. | 2802 | 6.93 | 15 | 2.17 | 5.16e-03 |
| response to hypoxia | A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. | 43 | 0.11 | 2 | 18.82 | 5.16e-03 |
| transcription | The synthesis of either RNA on a template of DNA or DNA on a template of RNA. | 2826 | 6.99 | 15 | 2.15 | 5.56e-03 |
| amino acid derivative biosynthetic process | The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents. | 46 | 0.11 | 2 | 17.59 | 5.88e-03 |
| transcription, DNA-dependent | The synthesis of RNA on a template of DNA. | 2588 | 6.40 | 14 | 2.19 | 6.16e-03 |
| cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. | 8889 | 21.97 | 35 | 1.59 | 6.19e-03 |
| RNA biosynthetic process | The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. | 2591 | 6.40 | 14 | 2.19 | 6.22e-03 |
| regionalization | The pattern specification process by which an axis or axes is subdivided in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. | 153 | 0.38 | 3 | 7.93 | 6.71e-03 |
| cell cycle phase | A cell cycle process comprising the steps by which a cell progresses through one of the biochemical and morphological phases and events that occur during successive cell replication or nuclear replication events. | 474 | 1.17 | 5 | 4.27 | 6.95e-03 |
| regulation of metabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. | 3184 | 7.87 | 16 | 2.03 | 7.06e-03 |
| chromosome organization and biogenesis (sensu Eukaryota) | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of eukaryotic chromosomes, structures composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. As in, but not restricted to, the eukaryotes (Eukaryota, ncbi_taxonomy_id:2759). | 477 | 1.18 | 5 | 4.24 | 7.13e-03 |
| positive regulation of cellular process | Any process that activates or increases the frequency, rate or extent of cellular processes, those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. | 1371 | 3.39 | 9 | 2.66 | 8.05e-03 |
| chromosome organization and biogenesis | A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. | 493 | 1.22 | 5 | 4.10 | 8.15e-03 |
| DNA metabolic process | The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | 922 | 2.28 | 7 | 3.07 | 8.85e-03 |
| DNA damage checkpoint | A signal transduction pathway, induced by DNA damage, that blocks cell cycle progression (in G1, G2 or metaphase) or slows the rate at which S phase proceeds. | 57 | 0.14 | 2 | 14.19 | 8.91e-03 |
| regulation of progression through mitotic cell cycle | Any process that modulates the rate or extent of progress through the mitotic cell cycle. | 57 | 0.14 | 2 | 14.19 | 8.91e-03 |