L2L Microarray Analysis Tool
Results for R06AX.profile.ud50
| Results summary | View all lists in GO:CellComp | View all genes in R06AX.profile.ud50 |
| List Name | Description | Total probes |
Expected matches |
Actual matches |
Fold Enrichment |
Binomial p-value |
|---|---|---|---|---|---|---|
| mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. | 984 | 4.86 | 19 | 3.91 | 8.57e-07 |
| intracellular membrane-bound organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. | 7804 | 38.58 | 64 | 1.66 | 1.07e-04 |
| membrane-bound organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. | 7809 | 38.61 | 64 | 1.66 | 1.09e-04 |
| mitochondrial part | Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. | 435 | 2.15 | 9 | 4.18 | 3.81e-04 |
| cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | 5577 | 27.57 | 47 | 1.70 | 4.54e-04 |
| intracellular organelle | Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. | 8838 | 43.69 | 65 | 1.49 | 1.49e-03 |
| organelle | Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. | 8844 | 43.72 | 65 | 1.49 | 1.52e-03 |
| cytoplasmic part | Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | 3772 | 18.65 | 33 | 1.77 | 1.63e-03 |
| replisome | A multi-component enzymatic machine at the replication fork which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins. | 13 | 0.06 | 2 | 31.12 | 1.84e-03 |
| nuclear replisome | A multi-component enzymatic machine at the nuclear replication fork, which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins. | 13 | 0.06 | 2 | 31.12 | 1.84e-03 |
| mitochondrial matrix | The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation. | 112 | 0.55 | 4 | 7.22 | 2.43e-03 |
| mitochondrial lumen | The volume enclosed by the mitochondrial inner membrane. | 112 | 0.55 | 4 | 7.22 | 2.43e-03 |
| ER to Golgi transport vesicle membrane | The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi. | 15 | 0.07 | 2 | 26.97 | 2.46e-03 |
| COPII vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state. | 15 | 0.07 | 2 | 26.97 | 2.46e-03 |
| nuclear replication fork | The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. | 16 | 0.08 | 2 | 25.28 | 2.80e-03 |
| membrane-enclosed lumen | The enclosed volume within a sealed membrane or between two sealed membranes. | 945 | 4.67 | 12 | 2.57 | 3.15e-03 |
| organelle lumen | The volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear membrane lumen. | 945 | 4.67 | 12 | 2.57 | 3.15e-03 |
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | 5251 | 25.96 | 41 | 1.58 | 3.76e-03 |
| nuclear chromosome | A chromosome found in the nucleus of a eukaryotic cell. | 127 | 0.63 | 4 | 6.37 | 3.81e-03 |
| ER to Golgi transport vesicle | A vesicle that mediates transport from the endoplasmic reticulum to the Golgi complex; bears a coat formed of the COPII coat complex proteins; such vesicles found associated with endoplasmic reticulum (ER) membranes at steady state, and are involved in ER to Golgi (anterograde) vesicle transport. | 19 | 0.09 | 2 | 21.29 | 3.95e-03 |
| intracellular organelle part | A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane. | 3292 | 16.28 | 28 | 1.72 | 5.01e-03 |
| organelle part | Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane. | 3305 | 16.34 | 28 | 1.71 | 5.27e-03 |
| intracellular part | Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. | 10196 | 50.41 | 69 | 1.37 | 7.27e-03 |
| mitochondrial envelope | The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. | 339 | 1.68 | 6 | 3.58 | 7.32e-03 |
| mitochondrial inner membrane | The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae. | 253 | 1.25 | 5 | 4.00 | 8.95e-03 |
| nuclear chromosome part | Any constituent part of a nuclear chromosome, a chromosome found in the nucleus of a eukaryotic cell. | 86 | 0.43 | 3 | 7.06 | 9.11e-03 |